J5_6I7O_006

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6I7O|1|2b|A|541, 6I7O|1|2b|C|543, 6I7O|1|2b|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|2b|C|31
6I7O|1|2b|U|32
6I7O|1|2b|U|33
6I7O|1|2b|G|34
6I7O|1|2b|U|35
*
6I7O|1|2b|A|473
6I7O|1|2b|A|474
6I7O|1|2b|A|475
6I7O|1|2b|U|476
6I7O|1|2b|A|477
6I7O|1|2b|A|478
6I7O|1|2b|C|479
*
6I7O|1|2b|G|509
6I7O|1|2b|G|510
6I7O|1|2b|A|511
6I7O|1|2b|A|512
6I7O|1|2b|U|513
6I7O|1|2b|G|514
6I7O|1|2b|A|515
6I7O|1|2b|G|516
*
6I7O|1|2b|C|536
6I7O|1|2b|G|537
6I7O|1|2b|A|538
6I7O|1|2b|G|539
6I7O|1|2b|G|540
6I7O|1|2b|A|541
6I7O|1|2b|A|542
6I7O|1|2b|C|543
6I7O|1|2b|A|544
6I7O|1|2b|A|545
6I7O|1|2b|U|546
*
6I7O|1|2b|A|592
6I7O|1|2b|U|593
6I7O|1|2b|A|594
6I7O|1|2b|G|595

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Wb

40S ribosomal protein S9-A

Chain cb

40S ribosomal protein S23-A

Chain gb

40S ribosomal protein S30-A