Loop J5_6I7O

3D structure

PDB id: 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description: The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 44 nucleotides
Bulged bases: 6I7O|1|2b|U|128, 6I7O|1|2b|C|130, 6I7O|1|2b|C|131, 6I7O|1|2b|U|132, 6I7O|1|2b|U|133, 6I7O|1|2b|A|140, 6I7O|1|2b|U|141, 6I7O|1|2b|U|178
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6I7O|1|2b|A|124
6I7O|1|2b|U|125
6I7O|1|2b|A|126
6I7O|1|2b|G|127
6I7O|1|2b|U|128
6I7O|1|2b|U|129
6I7O|1|2b|C|130
6I7O|1|2b|C|131
6I7O|1|2b|U|132
6I7O|1|2b|U|133
6I7O|1|2b|U|134
6I7O|1|2b|A|135
6I7O|1|2b|C|136
6I7O|1|2b|U|137
6I7O|1|2b|A|138
6I7O|1|2b|C|139
6I7O|1|2b|A|140
6I7O|1|2b|U|141
6I7O|1|2b|G|142
6I7O|1|2b|G|143
*
6I7O|1|2b|C|172
6I7O|1|2b|A|173
6I7O|1|2b|U|174
6I7O|1|2b|G|175
6I7O|1|2b|C|176
6I7O|1|2b|U|177
6I7O|1|2b|U|178
6I7O|1|2b|A|179
6I7O|1|2b|A|180
6I7O|1|2b|A|181
6I7O|1|2b|A|182
*
6I7O|1|2b|U|203
6I7O|1|2b|G|204
*
6I7O|1|2b|C|263
6I7O|1|2b|G|264
6I7O|1|2b|A|265
6I7O|1|2b|A|266
6I7O|1|2b|U|267
*
6I7O|1|2b|A|288
6I7O|1|2b|U|289
6I7O|1|2b|G|290
6I7O|1|2b|G|291
6I7O|1|2b|U|292
6I7O|1|2b|U|293

Current chains

Chain 2b: 18S ribosomal RNA

Nearby chains

Chain Sb: 40S ribosomal protein S4-A
Chain Tb: 40S ribosomal protein S6-A
Chain Vb: 40S ribosomal protein S8-A

J5_6I7O_009