J5_6I7O_021
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|2404, 6I7O|1|YQ|A|2817, 6I7O|1|YQ|G|2874, 6I7O|1|YQ|U|2978, 6I7O|1|YQ|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6I7O|1|YQ|A|2399
6I7O|1|YQ|G|2400
6I7O|1|YQ|A|2401
6I7O|1|YQ|A|2402
6I7O|1|YQ|G|2403
6I7O|1|YQ|A|2404
6I7O|1|YQ|C|2405
6I7O|1|YQ|C|2406
*
6I7O|1|YQ|G|2815
6I7O|1|YQ|G|2816
6I7O|1|YQ|A|2817
6I7O|1|YQ|U|2818
6I7O|1|YQ|A|2819
6I7O|1|YQ|A|2820
6I7O|1|YQ|C|2821
6I7O|1|YQ|U|2822
6I7O|1|YQ|G|2823
*
6I7O|1|YQ|C|2867
6I7O|1|YQ|U|2868
6I7O|1|YQ|U|2869
6I7O|1|YQ|C|2870
6I7O|1|YQ|G|2871
6I7O|1|YQ|A|2872
6I7O|1|YQ|U|2873
6I7O|1|YQ|G|2874
6I7O|1|YQ|U|2875
6I7O|1|YQ|C|2876
*
6I7O|1|YQ|G|2951
6I7O|1|YQ|G|2952
6I7O|1|YQ|U|2953
6I7O|1|YQ|U|2954
6I7O|1|YQ|U|2955
6I7O|1|YQ|A|2956
6I7O|1|YQ|G|2957
*
6I7O|1|YQ|U|2975
6I7O|1|YQ|A|2976
6I7O|1|YQ|G|2977
6I7O|1|YQ|U|2978
6I7O|1|YQ|U|2979
6I7O|1|YQ|U|2980
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XR
- 60S ribosomal protein L28
- Chain XV
- 60S ribosomal protein L29
- Chain XW
- 60S ribosomal protein L2-A
- Chain XX
- 60S ribosomal protein L17-A
- Chain YA
- 60S ribosomal protein L3
- Chain YE
- 60S ribosomal protein L4-A
- Chain nb
- Transfer RNA; tRNA
Coloring options: