J5_6I7O_022

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

6I7O|1|YQ|G|2418, 6I7O|1|YQ|A|2799, 6I7O|1|YQ|G|2800, 6I7O|1|YQ|A|2801, 6I7O|1|YQ|A|2802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6I7O_022 not in the Motif Atlas

Homologous match to J5_8P9A_015

Geometric discrepancy: 0.1622

The information below is about J5_8P9A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_96125.1

Basepair signature

cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6I7O|1|YQ|U|2416
6I7O|1|YQ|U|2417
6I7O|1|YQ|G|2418
6I7O|1|YQ|A|2419
*
6I7O|1|YQ|U|2611
6I7O|1|YQ|U|2612
6I7O|1|YQ|U|2613
6I7O|1|YQ|G|2614
*
6I7O|1|YQ|C|2627
6I7O|1|YQ|A|2628
*
6I7O|1|YQ|U|2650
6I7O|1|YQ|G|2651
*
6I7O|1|YQ|C|2798
6I7O|1|YQ|A|2799
6I7O|1|YQ|G|2800
6I7O|1|YQ|A|2801
6I7O|1|YQ|A|2802
6I7O|1|YQ|A|2803
6I7O|1|YQ|A|2804

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XP

60S ribosomal protein L42-A

Chain XQ

60S ribosomal protein L15-A

Chain XR

60S ribosomal protein L28

Chain XV

60S ribosomal protein L29

Chain XW

60S ribosomal protein L2-A

Chain YB

60S ribosomal protein L18-A

Chain YJ

60S ribosomal protein L21-A

Chain mb

Transfer RNA; tRNA