J5_6I7O_023

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

ACUUUGG*CUUUCCU*ACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU

Length

46 nucleotides

Bulged bases

6I7O|1|2b|U|638, 6I7O|1|2b|U|639, 6I7O|1|2b|U|640, 6I7O|1|2b|G|641, 6I7O|1|2b|C|696, 6I7O|1|2b|C|697, 6I7O|1|2b|U|813, 6I7O|1|2b|G|815, 6I7O|1|2b|A|856

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|2b|A|636
6I7O|1|2b|C|637
6I7O|1|2b|U|638
6I7O|1|2b|U|639
6I7O|1|2b|U|640
6I7O|1|2b|G|641
6I7O|1|2b|G|642
*
6I7O|1|2b|C|692
6I7O|1|2b|U|693
6I7O|1|2b|U|694
6I7O|1|2b|U|695
6I7O|1|2b|C|696
6I7O|1|2b|C|697
6I7O|1|2b|U|698
*
6I7O|1|2b|A|740
6I7O|1|2b|C|741
6I7O|1|2b|U|742
6I7O|1|2b|U|743
6I7O|1|2b|U|744
*
6I7O|1|2b|A|807
6I7O|1|2b|U|808
6I7O|1|2b|A|809
6I7O|1|2b|G|810
6I7O|1|2b|A|811
6I7O|1|2b|A|812
6I7O|1|2b|U|813
6I7O|1|2b|A|814
6I7O|1|2b|G|815
6I7O|1|2b|G|816
6I7O|1|2b|A|817
6I7O|1|2b|C|818
6I7O|1|2b|G|819
6I7O|1|2b|U|820
6I7O|1|2b|U|821
6I7O|1|2b|U|822
*
6I7O|1|2b|A|850
6I7O|1|2b|U|851
6I7O|1|2b|C|852
6I7O|1|2b|G|853
6I7O|1|2b|U|854
6I7O|1|2b|A|855
6I7O|1|2b|A|856
6I7O|1|2b|U|857
6I7O|1|2b|G|858
6I7O|1|2b|A|859
6I7O|1|2b|U|860

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Ub

40S ribosomal protein S7-A

Chain Xb

40S ribosomal protein S11-A

Chain YF

60S ribosomal protein L19-A

Chain Yb

40S ribosomal protein S13

Chain bb

40S ribosomal protein S22-A