Loop J5_6I7O

3D structure

PDB id: 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description: The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.3 Å

Loop

Sequence: ACUUUGG*CUUUCCU*ACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
Length: 46 nucleotides
Bulged bases: 6I7O|1|2b|U|638, 6I7O|1|2b|U|639, 6I7O|1|2b|U|640, 6I7O|1|2b|G|641, 6I7O|1|2b|C|696, 6I7O|1|2b|C|697, 6I7O|1|2b|U|813, 6I7O|1|2b|G|815, 6I7O|1|2b|A|856
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6I7O|1|2b|A|636
6I7O|1|2b|C|637
6I7O|1|2b|U|638
6I7O|1|2b|U|639
6I7O|1|2b|U|640
6I7O|1|2b|G|641
6I7O|1|2b|G|642
*
6I7O|1|2b|C|692
6I7O|1|2b|U|693
6I7O|1|2b|U|694
6I7O|1|2b|U|695
6I7O|1|2b|C|696
6I7O|1|2b|C|697
6I7O|1|2b|U|698
*
6I7O|1|2b|A|740
6I7O|1|2b|C|741
6I7O|1|2b|U|742
6I7O|1|2b|U|743
6I7O|1|2b|U|744
*
6I7O|1|2b|A|807
6I7O|1|2b|U|808
6I7O|1|2b|A|809
6I7O|1|2b|G|810
6I7O|1|2b|A|811
6I7O|1|2b|A|812
6I7O|1|2b|U|813
6I7O|1|2b|A|814
6I7O|1|2b|G|815
6I7O|1|2b|G|816
6I7O|1|2b|A|817
6I7O|1|2b|C|818
6I7O|1|2b|G|819
6I7O|1|2b|U|820
6I7O|1|2b|U|821
6I7O|1|2b|U|822
*
6I7O|1|2b|A|850
6I7O|1|2b|U|851
6I7O|1|2b|C|852
6I7O|1|2b|G|853
6I7O|1|2b|U|854
6I7O|1|2b|A|855
6I7O|1|2b|A|856
6I7O|1|2b|U|857
6I7O|1|2b|G|858
6I7O|1|2b|A|859
6I7O|1|2b|U|860

Current chains

Chain 2b: 18S ribosomal RNA

Nearby chains

Chain Ub: 40S ribosomal protein S7-A
Chain Xb: 40S ribosomal protein S11-A
Chain YF: 60S ribosomal protein L19-A
Chain Yb: 40S ribosomal protein S13
Chain bb: 40S ribosomal protein S22-A

J5_6I7O_023