J5_6IP5_003

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAAGUCGGCAAGCCGG*UG*UG*CGGACCAGG*CACUGUCC

Length

39 nucleotides

Bulged bases

6IP5|1|1A|G|3620, 6IP5|1|1A|G|3625, 6IP5|1|1A|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|1A|G|2846
6IP5|1|1A|G|2847
6IP5|1|1A|G|2848
6IP5|1|1A|A|2849
6IP5|1|1A|A|2850
6IP5|1|1A|G|2851
6IP5|1|1A|U|2852
6IP5|1|1A|C|2853
6IP5|1|1A|G|2854
6IP5|1|1A|G|2855
6IP5|1|1A|C|2856
6IP5|1|1A|A|2857
6IP5|1|1A|A|2858
6IP5|1|1A|G|2859
6IP5|1|1A|C|2860
6IP5|1|1A|C|2861
6IP5|1|1A|G|2862
6IP5|1|1A|G|2863
*
6IP5|1|1A|U|2887
6IP5|1|1A|G|2888
*
6IP5|1|1A|U|3613
6IP5|1|1A|G|3614
*
6IP5|1|1A|C|3618
6IP5|1|1A|G|3619
6IP5|1|1A|G|3620
6IP5|1|1A|A|3621
6IP5|1|1A|C|3622
6IP5|1|1A|C|3623
6IP5|1|1A|A|3624
6IP5|1|1A|G|3625
6IP5|1|1A|G|3626
*
6IP5|1|1A|C|3835
6IP5|1|1A|A|3836
6IP5|1|1A|C|3837
6IP5|1|1A|U|3838
6IP5|1|1A|G|3839
6IP5|1|1A|U|3840
6IP5|1|1A|C|3841
6IP5|1|1A|C|3842

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2L

60S ribosomal protein L19

Chain 2P

60S ribosomal protein L23

Chain 2Q

60S ribosomal protein L24

Chain 2m

Small subunit ribosomal RNA; SSU rRNA