J5_6IP5_007

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

6IP5|1|2m|G|589, 6IP5|1|2m|A|590, 6IP5|1|2m|U|591, 6IP5|1|2m|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|C|30
6IP5|1|2m|U|31
6IP5|1|2m|U|32
6IP5|1|2m|G|33
6IP5|1|2m|U|34
*
6IP5|1|2m|A|521
6IP5|1|2m|A|522
6IP5|1|2m|A|523
6IP5|1|2m|U|524
6IP5|1|2m|A|525
6IP5|1|2m|A|526
6IP5|1|2m|C|527
*
6IP5|1|2m|G|558
6IP5|1|2m|G|559
6IP5|1|2m|A|560
6IP5|1|2m|A|561
6IP5|1|2m|U|562
6IP5|1|2m|G|563
6IP5|1|2m|A|564
6IP5|1|2m|G|565
*
6IP5|1|2m|C|585
6IP5|1|2m|G|586
6IP5|1|2m|A|587
6IP5|1|2m|G|588
6IP5|1|2m|G|589
6IP5|1|2m|A|590
6IP5|1|2m|U|591
6IP5|1|2m|C|592
6IP5|1|2m|C|593
6IP5|1|2m|A|594
6IP5|1|2m|U|595
*
6IP5|1|2m|A|641
6IP5|1|2m|U|642
6IP5|1|2m|A|643
6IP5|1|2m|G|644

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30