J5_6IP6_004
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AGUCGGCAAGCCGG*UG*UG*CGGACCAGG*CACUGU
- Length
- 33 nucleotides
- Bulged bases
- 6IP6|1|1A|G|3620, 6IP6|1|1A|G|3625, 6IP6|1|1A|G|3839
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP6|1|1A|A|2850
6IP6|1|1A|G|2851
6IP6|1|1A|U|2852
6IP6|1|1A|C|2853
6IP6|1|1A|G|2854
6IP6|1|1A|G|2855
6IP6|1|1A|C|2856
6IP6|1|1A|A|2857
6IP6|1|1A|A|2858
6IP6|1|1A|G|2859
6IP6|1|1A|C|2860
6IP6|1|1A|C|2861
6IP6|1|1A|G|2862
6IP6|1|1A|G|2863
*
6IP6|1|1A|U|2887
6IP6|1|1A|G|2888
*
6IP6|1|1A|U|3613
6IP6|1|1A|G|3614
*
6IP6|1|1A|C|3618
6IP6|1|1A|G|3619
6IP6|1|1A|G|3620
6IP6|1|1A|A|3621
6IP6|1|1A|C|3622
6IP6|1|1A|C|3623
6IP6|1|1A|A|3624
6IP6|1|1A|G|3625
6IP6|1|1A|G|3626
*
6IP6|1|1A|C|3835
6IP6|1|1A|A|3836
6IP6|1|1A|C|3837
6IP6|1|1A|U|3838
6IP6|1|1A|G|3839
6IP6|1|1A|U|3840
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2L
- 60S ribosomal protein L19
- Chain 2P
- 60S ribosomal protein L23
- Chain 2Q
- 60S ribosomal protein L24
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: