J5_6IP8_005
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGA*UUUGACUGGGGCGGUACACC*GGUGUC*GCCUCACGAUCC*GGUGUCAGAAAAG
- Length
- 56 nucleotides
- Bulged bases
- 6IP8|1|1A|G|3922, 6IP8|1|1A|G|4195, 6IP8|1|1A|A|4376, 6IP8|1|1A|A|4378, 6IP8|1|1A|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|C|3919
6IP8|1|1A|U|3920
6IP8|1|1A|U|3921
6IP8|1|1A|G|3922
6IP8|1|1A|A|3923
*
6IP8|1|1A|U|4188
6IP8|1|1A|U|4189
6IP8|1|1A|U|4190
6IP8|1|1A|G|4191
6IP8|1|1A|A|4192
6IP8|1|1A|C|4193
6IP8|1|1A|U|4194
6IP8|1|1A|G|4195
6IP8|1|1A|G|4196
6IP8|1|1A|G|4197
6IP8|1|1A|G|4198
6IP8|1|1A|C|4199
6IP8|1|1A|G|4200
6IP8|1|1A|G|4201
6IP8|1|1A|U|4202
6IP8|1|1A|A|4203
6IP8|1|1A|C|4204
6IP8|1|1A|A|4205
6IP8|1|1A|C|4206
6IP8|1|1A|C|4207
*
6IP8|1|1A|G|4225
6IP8|1|1A|G|4226
6IP8|1|1A|U|4227
6IP8|1|1A|G|4228
6IP8|1|1A|U|4229
6IP8|1|1A|C|4230
*
6IP8|1|1A|G|4331
6IP8|1|1A|C|4332
6IP8|1|1A|C|4333
6IP8|1|1A|U|4334
6IP8|1|1A|C|4335
6IP8|1|1A|A|4336
6IP8|1|1A|C|4337
6IP8|1|1A|G|4338
6IP8|1|1A|A|4339
6IP8|1|1A|U|4340
6IP8|1|1A|C|4341
6IP8|1|1A|C|4342
*
6IP8|1|1A|G|4370
6IP8|1|1A|G|4371
6IP8|1|1A|U|4372
6IP8|1|1A|G|4373
6IP8|1|1A|U|4374
6IP8|1|1A|C|4375
6IP8|1|1A|A|4376
6IP8|1|1A|G|4377
6IP8|1|1A|A|4378
6IP8|1|1A|A|4379
6IP8|1|1A|A|4380
6IP8|1|1A|A|4381
6IP8|1|1A|G|4382
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2H
- 60S ribosomal protein L15
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
- Chain 2i
- 60S ribosomal protein L36a
- Chain zy
- Transfer RNA; tRNA
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