J5_6IP8_007
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGU*GCGAAUGGC*GAG*CAC*GGCAG
- Length
- 25 nucleotides
- Bulged bases
- 6IP8|1|2m|A|92, 6IP8|1|2m|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|2m|C|53
6IP8|1|2m|A|54
6IP8|1|2m|U|55
6IP8|1|2m|G|56
6IP8|1|2m|U|57
*
6IP8|1|2m|G|88
6IP8|1|2m|C|89
6IP8|1|2m|G|90
6IP8|1|2m|A|91
6IP8|1|2m|A|92
6IP8|1|2m|U|93
6IP8|1|2m|G|94
6IP8|1|2m|G|95
6IP8|1|2m|C|96
*
6IP8|1|2m|G|434
6IP8|1|2m|A|435
6IP8|1|2m|G|436
*
6IP8|1|2m|C|457
6IP8|1|2m|A|458
6IP8|1|2m|C|459
*
6IP8|1|2m|G|470
6IP8|1|2m|G|471
6IP8|1|2m|C|472
6IP8|1|2m|A|473
6IP8|1|2m|G|474
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2P
- 60S ribosomal protein L23
- Chain 2Q
- 60S ribosomal protein L24
- Chain 2q
- 40S ribosomal protein S4, X isoform
- Chain 2t
- 40S ribosomal protein S8
- Chain 3H
- 40S ribosomal protein S6
- Chain 3I
- 40S ribosomal protein S9
- Chain 3N
- 40S ribosomal protein S24
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