J5_6IP8_009
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UG*CGAUGAAG*CGAACG*CG*UA
- Length
- 20 nucleotides
- Bulged bases
- 6IP8|1|1C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|U|20
6IP8|1|1A|G|21
*
6IP8|1|1C|C|35
6IP8|1|1C|G|36
6IP8|1|1C|A|37
6IP8|1|1C|U|38
6IP8|1|1C|G|39
6IP8|1|1C|A|40
6IP8|1|1C|A|41
6IP8|1|1C|G|42
*
6IP8|1|1C|C|101
6IP8|1|1C|G|102
6IP8|1|1C|A|103
6IP8|1|1C|A|104
6IP8|1|1C|C|105
6IP8|1|1C|G|106
*
6IP8|1|1C|C|113
6IP8|1|1C|G|114
*
6IP8|1|1C|U|136
6IP8|1|1C|A|137
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 2H
- 60S ribosomal protein L15
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2b
- 60S ribosomal protein L35
- Chain 2d
- 60S ribosomal protein L37
- Chain 2f
- 60S ribosomal protein L39
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