J5_6IP8_010
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUGGCU*GAUCCUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 47 nucleotides
- Bulged bases
- 6IP8|1|1A|A|3908, 6IP8|1|1A|A|4394, 6IP8|1|1A|U|4452, 6IP8|1|1A|U|4555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|A|3903
6IP8|1|1A|G|3904
6IP8|1|1A|A|3905
6IP8|1|1A|A|3906
6IP8|1|1A|G|3907
6IP8|1|1A|A|3908
6IP8|1|1A|C|3909
6IP8|1|1A|C|3910
*
6IP8|1|1A|G|4392
6IP8|1|1A|G|4393
6IP8|1|1A|A|4394
6IP8|1|1A|U|4395
6IP8|1|1A|A|4396
6IP8|1|1A|A|4397
6IP8|1|1A|C|4398
6IP8|1|1A|U|4399
6IP8|1|1A|G|4400
6IP8|1|1A|G|4401
6IP8|1|1A|C|4402
6IP8|1|1A|U|4403
*
6IP8|1|1A|G|4440
6IP8|1|1A|A|4441
6IP8|1|1A|U|4442
6IP8|1|1A|C|4443
6IP8|1|1A|C|4444
6IP8|1|1A|U|4445
6IP8|1|1A|U|4446
6IP8|1|1A|C|4447
6IP8|1|1A|G|4448
6IP8|1|1A|A|4449
6IP8|1|1A|U|4450
6IP8|1|1A|G|4451
6IP8|1|1A|U|4452
6IP8|1|1A|C|4453
*
6IP8|1|1A|G|4528
6IP8|1|1A|G|4529
6IP8|1|1A|U|4530
6IP8|1|1A|U|4531
6IP8|1|1A|U|4532
6IP8|1|1A|A|4533
6IP8|1|1A|G|4534
*
6IP8|1|1A|U|4552
6IP8|1|1A|A|4553
6IP8|1|1A|G|4554
6IP8|1|1A|U|4555
6IP8|1|1A|U|4556
6IP8|1|1A|U|4557
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 1E
- 60S ribosomal protein L3
- Chain 1F
- 60S ribosomal protein L4
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2J
- 60S ribosomal protein L17
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
- Chain zx
- nascent peptide
- Chain zy
- Transfer RNA; tRNA
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