J5_6LKQ_002
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6LKQ_002 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.094
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6LKQ|1|s|C|36
6LKQ|1|s|U|37
6LKQ|1|s|G|38
6LKQ|1|s|G|39
*
6LKQ|1|s|C|403
6LKQ|1|s|G|404
6LKQ|1|s|U|405
6LKQ|1|s|G|406
*
6LKQ|1|s|C|436
6LKQ|1|s|U|437
6LKQ|1|s|U|438
6LKQ|1|s|U|439
6LKQ|1|s|C|440
6LKQ|1|s|A|441
6LKQ|1|s|G|442
*
6LKQ|1|s|C|492
6LKQ|1|s|A|493
6LKQ|1|s|G|494
6LKQ|1|s|A|495
6LKQ|1|s|A|496
6LKQ|1|s|G|497
6LKQ|1|s|A|498
6LKQ|1|s|A|499
6LKQ|1|s|G|500
*
6LKQ|1|s|C|545
6LKQ|1|s|A|546
6LKQ|1|s|A|547
6LKQ|1|s|G|548
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S4
- Chain K
- 30S ribosomal protein S12
- Chain v
- Peptide chain release factor 3
Coloring options: