J5_6LKQ_004

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6LKQ|1|t|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6LKQ_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0806

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6LKQ|1|t|C|47
6LKQ|1|t|G|48
6LKQ|1|t|A|49
6LKQ|1|t|U|50
6LKQ|1|t|G|51
6LKQ|1|t|A|52
6LKQ|1|t|A|53
6LKQ|1|t|G|54
*
6LKQ|1|t|C|116
6LKQ|1|t|G|117
6LKQ|1|t|A|118
6LKQ|1|t|A|119
6LKQ|1|t|U|120
6LKQ|1|t|G|121
*
6LKQ|1|t|C|130
6LKQ|1|t|A|131
*
6LKQ|1|t|U|148
6LKQ|1|t|A|149
6LKQ|1|t|U|150
*
6LKQ|1|t|A|176
6LKQ|1|t|G|177
6LKQ|1|t|G|178

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L34