J5_6LKQ_008

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

6LKQ|1|t|A|2062, 6LKQ|1|t|A|2448, 6LKQ|1|t|U|2449, 6LKQ|1|t|U|2585, 6LKQ|1|t|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|t|G|2057
6LKQ|1|t|A|2058
6LKQ|1|t|A|2059
6LKQ|1|t|A|2060
6LKQ|1|t|G|2061
6LKQ|1|t|A|2062
6LKQ|1|t|C|2063
6LKQ|1|t|C|2064
*
6LKQ|1|t|G|2446
6LKQ|1|t|G|2447
6LKQ|1|t|A|2448
6LKQ|1|t|U|2449
6LKQ|1|t|A|2450
6LKQ|1|t|A|2451
6LKQ|1|t|C|2452
6LKQ|1|t|A|2453
*
6LKQ|1|t|U|2500
6LKQ|1|t|C|2501
6LKQ|1|t|G|2502
6LKQ|1|t|A|2503
6LKQ|1|t|U|2504
6LKQ|1|t|G|2505
6LKQ|1|t|U|2506
*
6LKQ|1|t|G|2583
6LKQ|1|t|U|2584
6LKQ|1|t|U|2585
6LKQ|1|t|U|2586
6LKQ|1|t|A|2587
6LKQ|1|t|G|2588
*
6LKQ|1|t|C|2606
6LKQ|1|t|G|2607
6LKQ|1|t|G|2608
6LKQ|1|t|U|2609
6LKQ|1|t|C|2610
6LKQ|1|t|C|2611

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L15

Chain 3

50S ribosomal protein L16

Chain U

50S ribosomal protein L2

Chain V

50S ribosomal protein L3

Chain W

50S ribosomal protein L4

Chain a

50S ribosomal protein L22

Chain i

50S ribosomal protein L32