3D structure

PDB id
6LQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUGUCU*AUAAAUAAC*GGAAUG*CAAU*AUAG
Length
30 nucleotides
Bulged bases
6LQP|1|SA|A|544
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6LQP|1|SA|C|31
6LQP|1|SA|U|32
6LQP|1|SA|U|33
6LQP|1|SA|G|34
6LQP|1|SA|U|35
6LQP|1|SA|C|36
6LQP|1|SA|U|37
*
6LQP|1|SA|A|471
6LQP|1|SA|U|472
6LQP|1|SA|A|473
6LQP|1|SA|A|474
6LQP|1|SA|A|475
6LQP|1|SA|U|476
6LQP|1|SA|A|477
6LQP|1|SA|A|478
6LQP|1|SA|C|479
*
6LQP|1|SA|G|509
6LQP|1|SA|G|510
6LQP|1|SA|A|511
6LQP|1|SA|A|512
6LQP|1|SA|U|513
6LQP|1|SA|G|514
*
6LQP|1|SA|C|543
6LQP|1|SA|A|544
6LQP|1|SA|A|545
6LQP|1|SA|U|546
*
6LQP|1|SA|A|592
6LQP|1|SA|U|593
6LQP|1|SA|A|594
6LQP|1|SA|G|595

Current chains

Chain SA
18S pre-rRNA

Nearby chains

Chain 5H
Something about silencing protein 10
Chain RB
U3 small nucleolar ribonucleoprotein protein LCP5
Chain RJ
Ribosome biogenesis protein BMS1
Chain SK
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S23-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4117 s