J5_6LQT_002

3D structure

PDB id

6LQT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUUGUCU*AUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

39 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQT|1|SA|C|31
6LQT|1|SA|U|32
6LQT|1|SA|U|33
6LQT|1|SA|G|34
6LQT|1|SA|U|35
6LQT|1|SA|C|36
6LQT|1|SA|U|37
*
6LQT|1|SA|A|471
6LQT|1|SA|U|472
6LQT|1|SA|A|473
6LQT|1|SA|A|474
6LQT|1|SA|A|475
6LQT|1|SA|U|476
6LQT|1|SA|A|477
6LQT|1|SA|A|478
6LQT|1|SA|C|479
*
6LQT|1|SA|G|509
6LQT|1|SA|G|510
6LQT|1|SA|A|511
6LQT|1|SA|A|512
6LQT|1|SA|U|513
6LQT|1|SA|G|514
6LQT|1|SA|A|515
6LQT|1|SA|G|516
*
6LQT|1|SA|C|536
6LQT|1|SA|G|537
6LQT|1|SA|A|538
6LQT|1|SA|G|539
6LQT|1|SA|G|540
6LQT|1|SA|A|541
6LQT|1|SA|A|542
6LQT|1|SA|C|543
6LQT|1|SA|A|544
6LQT|1|SA|A|545
6LQT|1|SA|U|546
*
6LQT|1|SA|A|592
6LQT|1|SA|U|593
6LQT|1|SA|A|594
6LQT|1|SA|G|595

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 3F

Ribosomal RNA-processing protein 9

Chain 5H

Something about silencing protein 10

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S23-A

Chain SZ

40S ribosomal protein S24-A