J5_6LQV_002
3D structure
- PDB id
- 6LQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CUUGUCU*AUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 39 nucleotides
- Bulged bases
- 6LQV|1|SA|G|539
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQV|1|SA|C|31
6LQV|1|SA|U|32
6LQV|1|SA|U|33
6LQV|1|SA|G|34
6LQV|1|SA|U|35
6LQV|1|SA|C|36
6LQV|1|SA|U|37
*
6LQV|1|SA|A|471
6LQV|1|SA|U|472
6LQV|1|SA|A|473
6LQV|1|SA|A|474
6LQV|1|SA|A|475
6LQV|1|SA|U|476
6LQV|1|SA|A|477
6LQV|1|SA|A|478
6LQV|1|SA|C|479
*
6LQV|1|SA|G|509
6LQV|1|SA|G|510
6LQV|1|SA|A|511
6LQV|1|SA|A|512
6LQV|1|SA|U|513
6LQV|1|SA|G|514
6LQV|1|SA|A|515
6LQV|1|SA|G|516
*
6LQV|1|SA|C|536
6LQV|1|SA|G|537
6LQV|1|SA|A|538
6LQV|1|SA|G|539
6LQV|1|SA|G|540
6LQV|1|SA|A|541
6LQV|1|SA|A|542
6LQV|1|SA|C|543
6LQV|1|SA|A|544
6LQV|1|SA|A|545
6LQV|1|SA|U|546
*
6LQV|1|SA|A|592
6LQV|1|SA|U|593
6LQV|1|SA|A|594
6LQV|1|SA|G|595
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5H
- Something about silencing protein 10
- Chain RB
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S23-A
Coloring options: