J5_6LSR_005
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6LSR|1|2|G|3922, 6LSR|1|2|A|4376, 6LSR|1|2|G|4377, 6LSR|1|2|A|4378, 6LSR|1|2|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6LSR_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3091
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6LSR|1|2|U|3920
6LSR|1|2|U|3921
6LSR|1|2|G|3922
6LSR|1|2|A|3923
*
6LSR|1|2|U|4188
6LSR|1|2|U|4189
6LSR|1|2|U|4190
6LSR|1|2|G|4191
*
6LSR|1|2|C|4204
6LSR|1|2|A|4205
*
6LSR|1|2|U|4227
6LSR|1|2|G|4228
*
6LSR|1|2|C|4375
6LSR|1|2|A|4376
6LSR|1|2|G|4377
6LSR|1|2|A|4378
6LSR|1|2|A|4379
6LSR|1|2|A|4380
6LSR|1|2|A|4381
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 60S ribosomal export protein NMD3
- Chain L
- 60S ribosomal protein L27a
- Chain U
- 60S ribosomal protein L15
- Chain W
- 60S ribosomal protein L36a
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
- Chain m
- 60S ribosomal protein L8
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