J5_6LSR_006
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- AAGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GU*(B8W)(UR3)(PSU)UAG*UAGUUUU
- Length
- 40 nucleotides
- Bulged bases
- 6LSR|1|2|A|3908, 6LSR|1|2|A|4394, 6LSR|1|2|PSU|4450, 6LSR|1|2|G|4451, 6LSR|1|2|PSU|4531, 6LSR|1|2|U|4555, 6LSR|1|2|U|4556
- QA status
- Modified nucleotides: OMC, 5MC, PSU, B8W, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LSR|1|2|A|3902
6LSR|1|2|A|3903
6LSR|1|2|G|3904
6LSR|1|2|A|3905
6LSR|1|2|A|3906
6LSR|1|2|G|3907
6LSR|1|2|A|3908
6LSR|1|2|OMC|3909
6LSR|1|2|C|3910
*
6LSR|1|2|G|4392
6LSR|1|2|G|4393
6LSR|1|2|A|4394
6LSR|1|2|U|4395
6LSR|1|2|A|4396
6LSR|1|2|A|4397
6LSR|1|2|C|4398
6LSR|1|2|U|4399
6LSR|1|2|G|4400
*
6LSR|1|2|C|4444
6LSR|1|2|U|4445
6LSR|1|2|U|4446
6LSR|1|2|5MC|4447
6LSR|1|2|G|4448
6LSR|1|2|A|4449
6LSR|1|2|PSU|4450
6LSR|1|2|G|4451
6LSR|1|2|U|4452
*
6LSR|1|2|B8W|4529
6LSR|1|2|UR3|4530
6LSR|1|2|PSU|4531
6LSR|1|2|U|4532
6LSR|1|2|A|4533
6LSR|1|2|G|4534
*
6LSR|1|2|U|4552
6LSR|1|2|A|4553
6LSR|1|2|G|4554
6LSR|1|2|U|4555
6LSR|1|2|U|4556
6LSR|1|2|U|4557
6LSR|1|2|U|4558
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 0
- Zinc finger protein 622
- Chain 3
- 60S ribosomal export protein NMD3
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L29
- Chain D
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L27a
- Chain m
- 60S ribosomal protein L8
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