3D structure

PDB id
6M62 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AAGAAGACCCUGUUG*CACAGGGAUAACUGGCUUGUGGC*GCUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUU
Length
74 nucleotides
Bulged bases
6M62|1|1|A|2401, 6M62|1|1|U|2410, 6M62|1|1|U|2818, 6M62|1|1|A|2819, 6M62|1|1|A|2820, 6M62|1|1|G|2824, 6M62|1|1|G|2828, 6M62|1|1|U|2829, 6M62|1|1|U|2859, 6M62|1|1|U|2860, 6M62|1|1|U|2861, 6M62|1|1|U|2862, 6M62|1|1|G|2863, 6M62|1|1|C|2867, 6M62|1|1|U|2868, 6M62|1|1|U|2869, 6M62|1|1|C|2870, 6M62|1|1|G|2871, 6M62|1|1|A|2872, 6M62|1|1|U|2954, 6M62|1|1|U|2978, 6M62|1|1|U|2979, 6M62|1|1|U|2980
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6M62|1|1|A|2398
6M62|1|1|A|2399
6M62|1|1|G|2400
6M62|1|1|A|2401
6M62|1|1|A|2402
6M62|1|1|G|2403
6M62|1|1|A|2404
6M62|1|1|C|2405
6M62|1|1|C|2406
6M62|1|1|C|2407
6M62|1|1|U|2408
6M62|1|1|G|2409
6M62|1|1|U|2410
6M62|1|1|U|2411
6M62|1|1|G|2412
*
6M62|1|1|C|2810
6M62|1|1|A|2811
6M62|1|1|C|2812
6M62|1|1|A|2813
6M62|1|1|G|2814
6M62|1|1|G|2815
6M62|1|1|G|2816
6M62|1|1|A|2817
6M62|1|1|U|2818
6M62|1|1|A|2819
6M62|1|1|A|2820
6M62|1|1|C|2821
6M62|1|1|U|2822
6M62|1|1|G|2823
6M62|1|1|G|2824
6M62|1|1|C|2825
6M62|1|1|U|2826
6M62|1|1|U|2827
6M62|1|1|G|2828
6M62|1|1|U|2829
6M62|1|1|G|2830
6M62|1|1|G|2831
6M62|1|1|C|2832
*
6M62|1|1|G|2856
6M62|1|1|C|2857
6M62|1|1|U|2858
6M62|1|1|U|2859
6M62|1|1|U|2860
6M62|1|1|U|2861
6M62|1|1|U|2862
6M62|1|1|G|2863
6M62|1|1|A|2864
6M62|1|1|U|2865
6M62|1|1|U|2866
6M62|1|1|C|2867
6M62|1|1|U|2868
6M62|1|1|U|2869
6M62|1|1|C|2870
6M62|1|1|G|2871
6M62|1|1|A|2872
6M62|1|1|U|2873
6M62|1|1|G|2874
6M62|1|1|U|2875
6M62|1|1|C|2876
*
6M62|1|1|G|2950
6M62|1|1|G|2951
6M62|1|1|G|2952
6M62|1|1|U|2953
6M62|1|1|U|2954
6M62|1|1|U|2955
6M62|1|1|A|2956
6M62|1|1|G|2957
*
6M62|1|1|U|2975
6M62|1|1|A|2976
6M62|1|1|G|2977
6M62|1|1|U|2978
6M62|1|1|U|2979
6M62|1|1|U|2980
6M62|1|1|U|2981

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain C
60S ribosomal protein L4-A
Chain P
60S ribosomal protein L17-A
Chain b
Nucleolar GTP-binding protein 1
Chain m
Nucleolar GTP-binding protein 2
Chain r
Ribosome biogenesis protein NSA2
Chain s
Nuclear GTP-binding protein NUG1
Chain x
Ribosome assembly protein 4

Coloring options:

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