J5_6M62_005
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAGAAGACCCUGUUG*CACAGGGAUAACUGGCUUGUGGC*GCUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUU
- Length
- 74 nucleotides
- Bulged bases
- 6M62|1|1|A|2401, 6M62|1|1|U|2410, 6M62|1|1|U|2818, 6M62|1|1|A|2819, 6M62|1|1|A|2820, 6M62|1|1|G|2824, 6M62|1|1|G|2828, 6M62|1|1|U|2829, 6M62|1|1|U|2859, 6M62|1|1|U|2860, 6M62|1|1|U|2861, 6M62|1|1|U|2862, 6M62|1|1|G|2863, 6M62|1|1|C|2867, 6M62|1|1|U|2868, 6M62|1|1|U|2869, 6M62|1|1|C|2870, 6M62|1|1|G|2871, 6M62|1|1|A|2872, 6M62|1|1|U|2954, 6M62|1|1|U|2978, 6M62|1|1|U|2979, 6M62|1|1|U|2980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6M62|1|1|A|2398
6M62|1|1|A|2399
6M62|1|1|G|2400
6M62|1|1|A|2401
6M62|1|1|A|2402
6M62|1|1|G|2403
6M62|1|1|A|2404
6M62|1|1|C|2405
6M62|1|1|C|2406
6M62|1|1|C|2407
6M62|1|1|U|2408
6M62|1|1|G|2409
6M62|1|1|U|2410
6M62|1|1|U|2411
6M62|1|1|G|2412
*
6M62|1|1|C|2810
6M62|1|1|A|2811
6M62|1|1|C|2812
6M62|1|1|A|2813
6M62|1|1|G|2814
6M62|1|1|G|2815
6M62|1|1|G|2816
6M62|1|1|A|2817
6M62|1|1|U|2818
6M62|1|1|A|2819
6M62|1|1|A|2820
6M62|1|1|C|2821
6M62|1|1|U|2822
6M62|1|1|G|2823
6M62|1|1|G|2824
6M62|1|1|C|2825
6M62|1|1|U|2826
6M62|1|1|U|2827
6M62|1|1|G|2828
6M62|1|1|U|2829
6M62|1|1|G|2830
6M62|1|1|G|2831
6M62|1|1|C|2832
*
6M62|1|1|G|2856
6M62|1|1|C|2857
6M62|1|1|U|2858
6M62|1|1|U|2859
6M62|1|1|U|2860
6M62|1|1|U|2861
6M62|1|1|U|2862
6M62|1|1|G|2863
6M62|1|1|A|2864
6M62|1|1|U|2865
6M62|1|1|U|2866
6M62|1|1|C|2867
6M62|1|1|U|2868
6M62|1|1|U|2869
6M62|1|1|C|2870
6M62|1|1|G|2871
6M62|1|1|A|2872
6M62|1|1|U|2873
6M62|1|1|G|2874
6M62|1|1|U|2875
6M62|1|1|C|2876
*
6M62|1|1|G|2950
6M62|1|1|G|2951
6M62|1|1|G|2952
6M62|1|1|U|2953
6M62|1|1|U|2954
6M62|1|1|U|2955
6M62|1|1|A|2956
6M62|1|1|G|2957
*
6M62|1|1|U|2975
6M62|1|1|A|2976
6M62|1|1|G|2977
6M62|1|1|U|2978
6M62|1|1|U|2979
6M62|1|1|U|2980
6M62|1|1|U|2981
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain x
- Ribosome assembly protein 4
Coloring options: