J5_6M62_006

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGGCACAUC*GAUGUCCUAAGG*CUUGAU*AC*GGCCU

Length

35 nucleotides

Bulged bases

6M62|1|1|C|2654, 6M62|1|1|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6M62|1|1|G|2621
6M62|1|1|C|2622
6M62|1|1|G|2623
6M62|1|1|G|2624
6M62|1|1|C|2625
6M62|1|1|A|2626
6M62|1|1|C|2627
6M62|1|1|A|2628
6M62|1|1|U|2629
6M62|1|1|C|2630
*
6M62|1|1|G|2648
6M62|1|1|A|2649
6M62|1|1|U|2650
6M62|1|1|G|2651
6M62|1|1|U|2652
6M62|1|1|C|2653
6M62|1|1|C|2654
6M62|1|1|U|2655
6M62|1|1|A|2656
6M62|1|1|A|2657
6M62|1|1|G|2658
6M62|1|1|G|2659
*
6M62|1|1|C|2711
6M62|1|1|U|2712
6M62|1|1|U|2713
6M62|1|1|G|2714
6M62|1|1|A|2715
6M62|1|1|U|2716
*
6M62|1|1|A|2740
6M62|1|1|C|2741
*
6M62|1|1|G|2753
6M62|1|1|G|2754
6M62|1|1|C|2755
6M62|1|1|C|2756
6M62|1|1|U|2757

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain 5

rRNA-processing protein CGR1

Chain J

60S ribosomal protein L11-A

Chain T

60S ribosomal protein L21-A

Chain m

Nucleolar GTP-binding protein 2

Chain r

Ribosome biogenesis protein NSA2

Chain v

Ribosome biogenesis protein RPF2

Chain w

Regulator of ribosome biosynthesis