J5_6MPF_002

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6MPF|1|A|A|102, 6MPF|1|A|C|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6MPF_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0653

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6MPF|1|A|C|58
6MPF|1|A|A|59
6MPF|1|A|A|60
6MPF|1|A|G|61
*
6MPF|1|A|C|99
6MPF|1|A|G|100
6MPF|1|A|G|101
6MPF|1|A|A|102
6MPF|1|A|C|103
6MPF|1|A|G|104
6MPF|1|A|G|105
6MPF|1|A|G|106
*
6MPF|1|A|C|309
6MPF|1|A|A|310
6MPF|1|A|G|311
*
6MPF|1|A|C|332
6MPF|1|A|A|333
6MPF|1|A|C|334
*
6MPF|1|A|G|345
6MPF|1|A|G|346
6MPF|1|A|C|347
6MPF|1|A|A|348
6MPF|1|A|G|349

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20