J5_6MTC_008
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6MTC|1|9|U|55, 6MTC|1|9|A|92, 6MTC|1|9|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6MTC_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0686
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6MTC|1|9|C|53
6MTC|1|9|A|54
6MTC|1|9|U|55
6MTC|1|9|G|56
*
6MTC|1|9|C|89
6MTC|1|9|G|90
6MTC|1|9|A|91
6MTC|1|9|A|92
6MTC|1|9|U|93
6MTC|1|9|G|94
6MTC|1|9|G|95
6MTC|1|9|C|96
*
6MTC|1|9|G|434
6MTC|1|9|A|435
6MTC|1|9|G|436
*
6MTC|1|9|C|457
6MTC|1|9|A|458
6MTC|1|9|C|459
*
6MTC|1|9|G|470
6MTC|1|9|G|471
6MTC|1|9|C|472
6MTC|1|9|A|473
6MTC|1|9|G|474
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4, X isoform
- Chain GG
- 40S ribosomal protein S6
- Chain II
- 40S ribosomal protein S8
- Chain JJ
- 40S ribosomal protein S9
- Chain V
- 60S ribosomal protein L23
- Chain YY
- 40S ribosomal protein S24
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