J5_6MTD_002
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6MTD|1|5|C|2289, 6MTD|1|5|U|2350
- QA status
- Modified nucleotides: 2MG, I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6MTD_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0722
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTD|1|5|G|1335
6MTD|1|5|G|1336
6MTD|1|5|A|1337
6MTD|1|5|G|1338
6MTD|1|5|U|1339
6MTD|1|5|C|1340
*
6MTD|1|5|G|1516
6MTD|1|5|2MG|1517
6MTD|1|5|A|1518
6MTD|1|5|C|1519
*
6MTD|1|5|G|1658
6MTD|1|5|I4U|1659
6MTD|1|5|U|1660
6MTD|1|5|C|1661
*
6MTD|1|5|G|2288
6MTD|1|5|C|2289
6MTD|1|5|C|2290
*
6MTD|1|5|G|2345
6MTD|1|5|C|2346
6MTD|1|5|A|2347
6MTD|1|5|G|2348
6MTD|1|5|A|2349
6MTD|1|5|U|2350
6MTD|1|5|C|2351
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- el28
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