J5_6MTD_005
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6MTD|1|5|G|3922, 6MTD|1|5|A|4376, 6MTD|1|5|G|4377, 6MTD|1|5|A|4378, 6MTD|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6MTD_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3054
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTD|1|5|U|3920
6MTD|1|5|U|3921
6MTD|1|5|G|3922
6MTD|1|5|A|3923
*
6MTD|1|5|U|4188
6MTD|1|5|U|4189
6MTD|1|5|U|4190
6MTD|1|5|G|4191
*
6MTD|1|5|C|4204
6MTD|1|5|A|4205
*
6MTD|1|5|U|4227
6MTD|1|5|G|4228
*
6MTD|1|5|C|4375
6MTD|1|5|A|4376
6MTD|1|5|G|4377
6MTD|1|5|A|4378
6MTD|1|5|A|4379
6MTD|1|5|A|4380
6MTD|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- eL15
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain o
- eL42
Coloring options: