J5_6N1D_012

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6N1D|1|B23S|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N1D_012 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0981

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6N1D|1|B23S|C|47
6N1D|1|B23S|G|48
6N1D|1|B23S|A|49
6N1D|1|B23S|U|50
6N1D|1|B23S|G|51
6N1D|1|B23S|A|52
6N1D|1|B23S|A|53
6N1D|1|B23S|G|54
*
6N1D|1|B23S|C|116
6N1D|1|B23S|G|117
6N1D|1|B23S|A|118
6N1D|1|B23S|A|119
6N1D|1|B23S|U|120
6N1D|1|B23S|G|121
*
6N1D|1|B23S|C|130
6N1D|1|B23S|G|131
*
6N1D|1|B23S|C|148
6N1D|1|B23S|A|149
6N1D|1|B23S|C|150
*
6N1D|1|B23S|G|176
6N1D|1|B23S|G|177
6N1D|1|B23S|G|178

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL23

50S ribosomal protein L23

Chain BL34

50S ribosomal protein L34