J5_6N1D_015

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

6N1D|1|B23S|G|1758, 6N1D|1|B23S|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N1D_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.2097

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|G|1674
6N1D|1|B23S|C|1675
6N1D|1|B23S|A|1676
6N1D|1|B23S|A|1677
6N1D|1|B23S|G|1678
6N1D|1|B23S|U|1679
6N1D|1|B23S|U|1680
6N1D|1|B23S|G|1681
6N1D|1|B23S|G|1682
*
6N1D|1|B23S|U|1706
6N1D|1|B23S|G|1707
*
6N1D|1|B23S|C|1751
6N1D|1|B23S|C|1752
*
6N1D|1|B23S|G|1756
6N1D|1|B23S|U|1757
6N1D|1|B23S|G|1758
6N1D|1|B23S|A|1759
6N1D|1|B23S|A|1760
6N1D|1|B23S|C|1761
6N1D|1|B23S|A|1762
6N1D|1|B23S|G|1763
6N1D|1|B23S|G|1764
*
6N1D|1|B23S|C|1988
6N1D|1|B23S|G|1989
6N1D|1|B23S|C|1990

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BL03

50S ribosomal protein L3

Chain BL14

50S ribosomal protein L14

Chain BL19

50S ribosomal protein L19