J5_6N1D_016
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 6N1D|1|B23S|A|2448, 6N1D|1|B23S|U|2449, 6N1D|1|B23S|U|2585, 6N1D|1|B23S|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N1D|1|B23S|A|2057
6N1D|1|B23S|A|2058
6N1D|1|B23S|A|2059
6N1D|1|B23S|A|2060
6N1D|1|B23S|G|2061
6N1D|1|B23S|A|2062
6N1D|1|B23S|C|2063
6N1D|1|B23S|C|2064
*
6N1D|1|B23S|G|2446
6N1D|1|B23S|G|2447
6N1D|1|B23S|A|2448
6N1D|1|B23S|U|2449
6N1D|1|B23S|A|2450
6N1D|1|B23S|A|2451
6N1D|1|B23S|C|2452
6N1D|1|B23S|A|2453
*
6N1D|1|B23S|U|2500
6N1D|1|B23S|C|2501
6N1D|1|B23S|G|2502
6N1D|1|B23S|A|2503
6N1D|1|B23S|U|2504
6N1D|1|B23S|G|2505
6N1D|1|B23S|U|2506
6N1D|1|B23S|C|2507
*
6N1D|1|B23S|G|2582
6N1D|1|B23S|G|2583
6N1D|1|B23S|U|2584
6N1D|1|B23S|U|2585
6N1D|1|B23S|C|2586
6N1D|1|B23S|A|2587
6N1D|1|B23S|G|2588
*
6N1D|1|B23S|C|2606
6N1D|1|B23S|G|2607
6N1D|1|B23S|G|2608
6N1D|1|B23S|U|2609
6N1D|1|B23S|C|2610
6N1D|1|B23S|U|2611
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain BATN
- Transfer RNA; tRNA
- Chain BL02
- 50S ribosomal protein L2
- Chain BL03
- 50S ribosomal protein L3
- Chain BL04
- 50S ribosomal protein L4
- Chain BL15
- 50S ribosomal protein L15
- Chain BL22
- 50S ribosomal protein L22
- Chain BL27
- 50S ribosomal protein L27
- Chain BL32
- 50S ribosomal protein L32
Coloring options: