J5_6N1D_018
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUC*GAG*CCG*CUUCG*CC
- Length
- 17 nucleotides
- Bulged bases
- 6N1D|1|BATN|U|8, 6N1D|1|BATN|C|44
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N1D_018 not in the Motif Atlas
- Homologous match to J5_4WZD_022
- Geometric discrepancy: 0.5126
- The information below is about J5_4WZD_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70787.1
- Basepair signature
- cWW-cWW-cWW-F-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6N1D|1|BATN|G|7
6N1D|1|BATN|U|8
6N1D|1|BATN|U|9
6N1D|1|BATN|C|10
*
6N1D|1|BATN|G|25
6N1D|1|BATN|A|26
6N1D|1|BATN|G|27
*
6N1D|1|BATN|C|43
6N1D|1|BATN|C|44
6N1D|1|BATN|G|45
*
6N1D|1|BATN|C|47|||F
6N1D|1|BATN|U|47|||G
6N1D|1|BATN|U|47|||H
6N1D|1|BATN|C|48
6N1D|1|BATN|G|49
*
6N1D|1|BATN|C|65
6N1D|1|BATN|C|66
Current chains
- Chain BATN
- A tRNA
Nearby chains
- Chain B23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL05
- 50S ribosomal protein L5
- Chain BL16
- 50S ribosomal protein L16
- Chain BS13
- 30S ribosomal protein S13
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