J5_6N8J_005
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6N8J|1|1|G|2116, 6N8J|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N8J_005 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1137
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6N8J|1|1|G|1906
6N8J|1|1|C|1907
6N8J|1|1|A|1908
6N8J|1|1|A|1909
6N8J|1|1|A|1910
6N8J|1|1|A|1911
6N8J|1|1|U|1912
6N8J|1|1|A|1913
6N8J|1|1|G|1914
*
6N8J|1|1|U|1938
6N8J|1|1|G|1939
*
6N8J|1|1|U|2109
6N8J|1|1|G|2110
*
6N8J|1|1|C|2114
6N8J|1|1|G|2115
6N8J|1|1|G|2116
6N8J|1|1|A|2117
6N8J|1|1|C|2118
6N8J|1|1|A|2119
6N8J|1|1|A|2120
6N8J|1|1|G|2121
6N8J|1|1|G|2122
*
6N8J|1|1|C|2331
6N8J|1|1|A|2332
6N8J|1|1|C|2333
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Bud site selection protein 20
- Chain R
- 60S ribosomal protein L19-A
- Chain V
- 60S ribosomal protein L23-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain u
- Ribosome biogenesis protein RLP24
Coloring options: