J5_6N8K_011
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6N8K|1|1|U|719, 6N8K|1|1|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N8K_011 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0981
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6N8K|1|1|C|675
6N8K|1|1|G|676
6N8K|1|1|A|677
6N8K|1|1|G|678
*
6N8K|1|1|C|702
6N8K|1|1|G|703
6N8K|1|1|U|704
6N8K|1|1|A|705
6N8K|1|1|A|706
*
6N8K|1|1|U|713
6N8K|1|1|G|714
6N8K|1|1|A|715
6N8K|1|1|A|716
6N8K|1|1|C|717
6N8K|1|1|G|718
6N8K|1|1|U|719
6N8K|1|1|A|720
6N8K|1|1|G|721
*
6N8K|1|1|C|749
6N8K|1|1|G|750
6N8K|1|1|A|751
*
6N8K|1|1|U|782
6N8K|1|1|A|783
6N8K|1|1|A|784
6N8K|1|1|G|785
6N8K|1|1|A|786
6N8K|1|1|G|787
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L36-A
- Chain o
- 60S ribosomal protein L29
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