J5_6N8M_003
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6N8M|1|A|U|719, 6N8M|1|A|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N8M_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0972
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6N8M|1|A|C|675
6N8M|1|A|G|676
6N8M|1|A|A|677
6N8M|1|A|G|678
*
6N8M|1|A|C|702
6N8M|1|A|G|703
6N8M|1|A|U|704
6N8M|1|A|A|705
6N8M|1|A|A|706
*
6N8M|1|A|U|713
6N8M|1|A|G|714
6N8M|1|A|A|715
6N8M|1|A|A|716
6N8M|1|A|C|717
6N8M|1|A|G|718
6N8M|1|A|U|719
6N8M|1|A|A|720
6N8M|1|A|G|721
*
6N8M|1|A|C|749
6N8M|1|A|G|750
6N8M|1|A|A|751
*
6N8M|1|A|U|782
6N8M|1|A|A|783
6N8M|1|A|A|784
6N8M|1|A|G|785
6N8M|1|A|A|786
6N8M|1|A|G|787
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain d
- 60S ribosomal protein L18-A
- Chain n
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L29
- Chain v
- 60S ribosomal protein L36-A
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