J5_6N9E_004
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6N9E|1|1A|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N9E_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0948
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6N9E|1|1A|C|607
6N9E|1|1A|G|608
6N9E|1|1A|A|609
6N9E|1|1A|C|610
6N9E|1|1A|U|611
6N9E|1|1A|C|612
*
6N9E|1|1A|G|715
6N9E|1|1A|G|716
6N9E|1|1A|A|717
6N9E|1|1A|C|718
*
6N9E|1|1A|G|856
6N9E|1|1A|U|857
6N9E|1|1A|U|858
6N9E|1|1A|C|859
*
6N9E|1|1A|G|1240
6N9E|1|1A|C|1241
*
6N9E|1|1A|G|1296
6N9E|1|1A|C|1297
6N9E|1|1A|G|1298
6N9E|1|1A|A|1299
6N9E|1|1A|A|1300
6N9E|1|1A|U|1301
6N9E|1|1A|G|1302
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S Ribosomal Protein L35
- Chain 1F
- 50S Ribosomal Protein L4
- Chain 1P
- 50S Ribosomal Protein L15
- Chain 1U
- 50S Ribosomal Protein L20
- Chain 1V
- 50S Ribosomal Protein L21
Coloring options: