J5_6N9E_016

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N9E_016 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0764

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6N9E|1|2a|C|36
6N9E|1|2a|U|37
6N9E|1|2a|G|38
6N9E|1|2a|G|39
*
6N9E|1|2a|C|403
6N9E|1|2a|U|404
6N9E|1|2a|U|405
6N9E|1|2a|G|406
*
6N9E|1|2a|C|436
6N9E|1|2a|U|437
6N9E|1|2a|G|438
6N9E|1|2a|A|439
6N9E|1|2a|A|441
6N9E|1|2a|C|442
*
6N9E|1|2a|G|492
6N9E|1|2a|G|493
6N9E|1|2a|U|494
6N9E|1|2a|A|495
6N9E|1|2a|A|496
6N9E|1|2a|U|498
6N9E|1|2a|A|499
6N9E|1|2a|G|500
*
6N9E|1|2a|C|545
6N9E|1|2a|G|546
6N9E|1|2a|A|547
6N9E|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S Ribosomal Protein S4

Chain 2l

30S ribosomal protein S12