3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6N9F|1|1a|A|109, 6N9F|1|1a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6N9F_022 not in the Motif Atlas
Homologous match to J5_6CZR_021
Geometric discrepancy: 0.0931
The information below is about J5_6CZR_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6N9F|1|1a|C|58
6N9F|1|1a|A|59
6N9F|1|1a|A|60
6N9F|1|1a|G|61
*
6N9F|1|1a|C|106
6N9F|1|1a|G|107
6N9F|1|1a|G|108
6N9F|1|1a|A|109
6N9F|1|1a|C|110
6N9F|1|1a|G|111
6N9F|1|1a|G|112
6N9F|1|1a|G|113
*
6N9F|1|1a|C|314
6N9F|1|1a|A|315
6N9F|1|1a|G|316
*
6N9F|1|1a|C|337
6N9F|1|1a|A|338
6N9F|1|1a|C|339
*
6N9F|1|1a|G|350
6N9F|1|1a|G|351
6N9F|1|1a|C|352
6N9F|1|1a|A|353
6N9F|1|1a|G|354

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1O
50S Ribosomal Protein L14
Chain 1T
50S Ribosomal Protein L19
Chain 1p
30S ribosomal protein S16
Chain 1t
30S Ribosomal Protein S20

Coloring options:


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