J5_6ND5_018

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ND5_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.084

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6ND5|1|2a|C|36
6ND5|1|2a|U|37
6ND5|1|2a|G|38
6ND5|1|2a|G|39
*
6ND5|1|2a|C|403
6ND5|1|2a|U|404
6ND5|1|2a|U|405
6ND5|1|2a|G|406
*
6ND5|1|2a|C|436
6ND5|1|2a|U|437
6ND5|1|2a|G|438
6ND5|1|2a|A|439
6ND5|1|2a|A|441
6ND5|1|2a|C|442
*
6ND5|1|2a|G|492
6ND5|1|2a|G|493
6ND5|1|2a|U|494
6ND5|1|2a|A|495
6ND5|1|2a|A|496
6ND5|1|2a|U|498
6ND5|1|2a|A|499
6ND5|1|2a|G|500
*
6ND5|1|2a|C|545
6ND5|1|2a|G|546
6ND5|1|2a|A|547
6ND5|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12