J5_6NSH_011

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6NSH_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0955

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6NSH|1|XA|C|36
6NSH|1|XA|U|37
6NSH|1|XA|G|38
6NSH|1|XA|G|39
*
6NSH|1|XA|C|403
6NSH|1|XA|U|404
6NSH|1|XA|U|405
6NSH|1|XA|G|406
*
6NSH|1|XA|C|436
6NSH|1|XA|U|437
6NSH|1|XA|G|438
6NSH|1|XA|A|439
6NSH|1|XA|A|440
6NSH|1|XA|C|442
*
6NSH|1|XA|G|492
6NSH|1|XA|G|493
6NSH|1|XA|U|494
6NSH|1|XA|A|495
6NSH|1|XA|A|496
6NSH|1|XA|U|497
6NSH|1|XA|A|498
6NSH|1|XA|G|500
*
6NSH|1|XA|C|545
6NSH|1|XA|G|546
6NSH|1|XA|A|547
6NSH|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12