J5_6NTA_001

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6NTA_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0953

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6NTA|1|QA|C|36
6NTA|1|QA|U|37
6NTA|1|QA|G|38
6NTA|1|QA|G|39
*
6NTA|1|QA|C|403
6NTA|1|QA|U|404
6NTA|1|QA|U|405
6NTA|1|QA|G|406
*
6NTA|1|QA|C|436
6NTA|1|QA|U|437
6NTA|1|QA|G|438
6NTA|1|QA|A|439
6NTA|1|QA|A|440
6NTA|1|QA|C|442
*
6NTA|1|QA|G|492
6NTA|1|QA|G|493
6NTA|1|QA|U|494
6NTA|1|QA|A|495
6NTA|1|QA|A|496
6NTA|1|QA|U|497
6NTA|1|QA|A|498
6NTA|1|QA|G|500
*
6NTA|1|QA|C|545
6NTA|1|QA|G|546
6NTA|1|QA|A|547
6NTA|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9