J5_6NWY_011

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6NWY_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1062

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6NWY|1|XA|C|36
6NWY|1|XA|U|37
6NWY|1|XA|G|38
6NWY|1|XA|G|39
*
6NWY|1|XA|C|403
6NWY|1|XA|U|404
6NWY|1|XA|U|405
6NWY|1|XA|G|406
*
6NWY|1|XA|C|436
6NWY|1|XA|U|437
6NWY|1|XA|G|438
6NWY|1|XA|A|440
6NWY|1|XA|A|441
6NWY|1|XA|C|442
*
6NWY|1|XA|G|492
6NWY|1|XA|G|493
6NWY|1|XA|U|494
6NWY|1|XA|A|495
6NWY|1|XA|A|497
6NWY|1|XA|U|498
6NWY|1|XA|A|499
6NWY|1|XA|G|500
*
6NWY|1|XA|C|545
6NWY|1|XA|G|546
6NWY|1|XA|A|547
6NWY|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12