J5_6O3M_001

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O3M_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0845

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6O3M|1|QA|C|36
6O3M|1|QA|U|37
6O3M|1|QA|G|38
6O3M|1|QA|G|39
*
6O3M|1|QA|C|403
6O3M|1|QA|U|404
6O3M|1|QA|U|405
6O3M|1|QA|G|406
*
6O3M|1|QA|C|436
6O3M|1|QA|U|437
6O3M|1|QA|G|438
6O3M|1|QA|A|439
6O3M|1|QA|A|440
6O3M|1|QA|C|442
*
6O3M|1|QA|G|492
6O3M|1|QA|G|493
6O3M|1|QA|U|494
6O3M|1|QA|A|495
6O3M|1|QA|A|496
6O3M|1|QA|U|497
6O3M|1|QA|A|498
6O3M|1|QA|G|500
*
6O3M|1|QA|C|545
6O3M|1|QA|G|546
6O3M|1|QA|A|547
6O3M|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9