J5_6O7K_003

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6O7K|1|g|A|109, 6O7K|1|g|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O7K_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1096

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6O7K|1|g|C|58
6O7K|1|g|A|59
6O7K|1|g|A|60
6O7K|1|g|G|61
*
6O7K|1|g|C|106
6O7K|1|g|G|107
6O7K|1|g|G|108
6O7K|1|g|A|109
6O7K|1|g|C|110
6O7K|1|g|G|111
6O7K|1|g|G|112
6O7K|1|g|G|113
*
6O7K|1|g|C|314
6O7K|1|g|A|315
6O7K|1|g|C|316
*
6O7K|1|g|G|337
6O7K|1|g|A|338
6O7K|1|g|C|339
*
6O7K|1|g|G|350
6O7K|1|g|G|351
6O7K|1|g|C|352
6O7K|1|g|A|353
6O7K|1|g|G|354

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20

Chain f

Translation initiation factor IF-2

Chain y

30S ribosomal protein S16