J5_6O8X_008
3D structure
- PDB id
- 6O8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.68 Å
Loop
- Sequence
- CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6O8X_008 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.5896
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6O8X|1|a|C|33
6O8X|1|a|U|34
6O8X|1|a|G|35
6O8X|1|a|G|36
*
6O8X|1|a|C|418
6O8X|1|a|G|419
6O8X|1|a|U|420
6O8X|1|a|G|421
*
6O8X|1|a|C|451
6O8X|1|a|U|452
6O8X|1|a|G|453
6O8X|1|a|U|454
6O8X|1|a|U|455
6O8X|1|a|G|456
*
6O8X|1|a|C|508
6O8X|1|a|C|509
6O8X|1|a|A|510
6O8X|1|a|G|511
6O8X|1|a|A|512
6O8X|1|a|A|513
6O8X|1|a|A|514
6O8X|1|a|G|515
*
6O8X|1|a|C|560
6O8X|1|a|A|561
6O8X|1|a|A|562
6O8X|1|a|G|563
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: