J5_6O8Z_005
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6O8Z|1|A|G|1772, 6O8Z|1|A|G|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6O8Z_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1462
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6O8Z|1|A|G|1717
6O8Z|1|A|C|1718
6O8Z|1|A|A|1719
6O8Z|1|A|A|1720
6O8Z|1|A|A|1721
6O8Z|1|A|A|1722
6O8Z|1|A|U|1723
6O8Z|1|A|G|1724
6O8Z|1|A|A|1725
*
6O8Z|1|A|U|1749
6O8Z|1|A|G|1750
*
6O8Z|1|A|C|1765
6O8Z|1|A|C|1766
*
6O8Z|1|A|G|1770
6O8Z|1|A|U|1771
6O8Z|1|A|G|1772
6O8Z|1|A|A|1773
6O8Z|1|A|A|1774
6O8Z|1|A|U|1775
6O8Z|1|A|A|1776
6O8Z|1|A|G|1777
6O8Z|1|A|G|1778
*
6O8Z|1|A|C|2002
6O8Z|1|A|A|2003
6O8Z|1|A|C|2004
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
- Chain Q
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: