J5_6O97_010

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6O97|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O97_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0686

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6O97|1|2A|C|47
6O97|1|2A|G|48
6O97|1|2A|A|49
6O97|1|2A|U|50
6O97|1|2A|G|51
6O97|1|2A|A|52
6O97|1|2A|A|53
6O97|1|2A|G|54
*
6O97|1|2A|C|116
6O97|1|2A|G|117
6O97|1|2A|A|118
6O97|1|2A|A|119
6O97|1|2A|U|120
6O97|1|2A|G|121
*
6O97|1|2A|C|130
6O97|1|2A|G|131
*
6O97|1|2A|C|148
6O97|1|2A|A|149
6O97|1|2A|C|150
*
6O97|1|2A|G|176
6O97|1|2A|G|177
6O97|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23