J5_6O97_018

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O97_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0841

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6O97|1|2a|C|36
6O97|1|2a|U|37
6O97|1|2a|G|38
6O97|1|2a|G|39
*
6O97|1|2a|C|403
6O97|1|2a|U|404
6O97|1|2a|U|405
6O97|1|2a|G|406
*
6O97|1|2a|C|436
6O97|1|2a|U|437
6O97|1|2a|G|438
6O97|1|2a|A|439
6O97|1|2a|A|441
6O97|1|2a|C|442
*
6O97|1|2a|G|492
6O97|1|2a|G|493
6O97|1|2a|U|494
6O97|1|2a|A|495
6O97|1|2a|A|496
6O97|1|2a|U|498
6O97|1|2a|A|499
6O97|1|2a|G|500
*
6O97|1|2a|C|545
6O97|1|2a|G|546
6O97|1|2a|A|547
6O97|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12