J5_6O9K_009
3D structure
- PDB id
- 6O9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6O9K|1|a|A|109, 6O9K|1|a|C|352
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6O9K_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1586
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6O9K|1|a|C|58
6O9K|1|a|A|59
6O9K|1|a|A|60
6O9K|1|a|G|61
*
6O9K|1|a|C|106
6O9K|1|a|G|107
6O9K|1|a|G|108
6O9K|1|a|A|109
6O9K|1|a|C|110
6O9K|1|a|G|111
6O9K|1|a|G|112
6O9K|1|a|G|113
*
6O9K|1|a|C|314
6O9K|1|a|A|315
6O9K|1|a|C|316
*
6O9K|1|a|G|337
6O9K|1|a|A|338
6O9K|1|a|C|339
*
6O9K|1|a|G|350
6O9K|1|a|G|351
6O9K|1|a|C|352
6O9K|1|a|A|353
6O9K|1|a|G|354
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
- Chain z
- Translation initiation factor IF-2
Coloring options: