3D structure

PDB id
6OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OF1_018 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0789
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6OF1|1|2a|C|36
6OF1|1|2a|U|37
6OF1|1|2a|G|38
6OF1|1|2a|G|39
*
6OF1|1|2a|C|403
6OF1|1|2a|U|404
6OF1|1|2a|U|405
6OF1|1|2a|G|406
*
6OF1|1|2a|C|436
6OF1|1|2a|U|437
6OF1|1|2a|G|438
6OF1|1|2a|A|439
6OF1|1|2a|A|441
6OF1|1|2a|C|442
*
6OF1|1|2a|G|492
6OF1|1|2a|G|493
6OF1|1|2a|U|494
6OF1|1|2a|A|495
6OF1|1|2a|A|496
6OF1|1|2a|U|498
6OF1|1|2a|A|499
6OF1|1|2a|G|500
*
6OF1|1|2a|C|545
6OF1|1|2a|G|546
6OF1|1|2a|A|547
6OF1|1|2a|G|548

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2d
30S ribosomal protein S4
Chain 2l
30S ribosomal protein S12

Coloring options:


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