J5_6OF6_001

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OF6_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0754

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OF6|1|QA|C|36
6OF6|1|QA|U|37
6OF6|1|QA|G|38
6OF6|1|QA|G|39
*
6OF6|1|QA|C|403
6OF6|1|QA|U|404
6OF6|1|QA|U|405
6OF6|1|QA|G|406
*
6OF6|1|QA|C|436
6OF6|1|QA|U|437
6OF6|1|QA|G|438
6OF6|1|QA|A|439
6OF6|1|QA|A|440
6OF6|1|QA|C|442
*
6OF6|1|QA|G|492
6OF6|1|QA|G|493
6OF6|1|QA|U|494
6OF6|1|QA|A|495
6OF6|1|QA|A|496
6OF6|1|QA|U|497
6OF6|1|QA|A|498
6OF6|1|QA|G|500
*
6OF6|1|QA|C|545
6OF6|1|QA|G|546
6OF6|1|QA|A|547
6OF6|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9