3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CG*CAC*GGG
Length
22 nucleotides
Bulged bases
6OF6|1|RA|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OF6_003 not in the Motif Atlas
Homologous match to J5_9DFE_001
Geometric discrepancy: 0.0761
The information below is about J5_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6OF6|1|RA|C|47
6OF6|1|RA|G|48
6OF6|1|RA|A|49
6OF6|1|RA|U|50
6OF6|1|RA|G|51
6OF6|1|RA|A|52
6OF6|1|RA|A|53
6OF6|1|RA|G|54
*
6OF6|1|RA|C|116
6OF6|1|RA|G|117
6OF6|1|RA|A|118
6OF6|1|RA|A|119
6OF6|1|RA|U|120
6OF6|1|RA|G|121
*
6OF6|1|RA|C|130
6OF6|1|RA|G|131
*
6OF6|1|RA|C|148
6OF6|1|RA|A|149
6OF6|1|RA|C|150
*
6OF6|1|RA|G|176
6OF6|1|RA|G|177
6OF6|1|RA|G|178

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


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